5mC identification tools

1) DeepSignal: trained on Homo Sapiens and Escherichia coli data, Ni et al. published the tool in Bioinformatics in 2019.

2) DeepMod: trained on Escherichia coli data, Liu et al. published the tool in Nature Communications in 2019.

3) signalAlign: trained on Escherichia coli data, Rand et al. published the tool in Nature Methods in 2017.

4) HMM (hidden Markov model): trained on Escherichia coli data, Simpson et al. published the tool in Nature Methods in 2017.

6mA identification tools

1) SICD6mA: trained on human and rice data, Liu published the tool in bioRxiv in 2020.

2) p6mA: trained on four species data, Wang et al. published the tool in Epigenetics & Chromatin in 2020.

3) 6mAFinder: trained on mouse and rice data, Xu et al. published the tool in Bioinformatics in 2020.

4) 6mA-RicePred: trained on rice data, Huang et al. published the tool in Frontiers in Plant Science in 2020.

5) i6mA-Pred: trained on rice data, Chen et al. published the tool in Bioinformatics in 2019.

6) SNNRice6mA: trained on rice data, Yu et al. published the tool in Frontiers in Genetics in 2019.

7) i6mA-DNCP: trained on rice data, Kong et al. published the tool in Genes (Basel) in 2019.

8) SDM6A: trained on rice data, Basith et al. published the tool in Molecular Therapy Nucleic Acids in 2019.

9) iDNA6mA-Rice: trained on rice data, Lv et al. published the tool in Frontiers in Genetics in 2019.

10) iDNA6mA-PseKNC: trained on rice data, Chen et al. published the tool in Genomics in 2018.

4mC identification tools

1) DNA4mC-LIP: trained on six species data, Tang et al. published the tool in Bioinformatics in 2020.

2) i4mC-ROSE: trained on Fragaria vesca and Rosa chinensis data, Hasan et al. published the tool in International Journal of Biological Macromolecules in 2019.

3) 4mCpred-EL: trained on mouse data, Manavalan et al. published the tool in Cells in 2019.

4) Meta-4mCpred: trained on six species data, Manavalan et al. published the tool in Molecular Therapy Nucleic Acids in 2019.

5) 4mcPred-IFL: trained on six species data, Wei et al. published the tool in Bioinformatics in 2019.

6) 4mcPred-SVM: trained on six species data, Wei et al. published the tool in Bioinformatics in 2019.

7) 4mCPred: trained on six species data, He et al. published the tool in Bioinformatics in 2019.

8) iDNA4mC: trained on six species data, Chen et al. published the tool in Bioinformatics in 2017.