Hao Lin Hui Ding Students Visiting Scholars Alumni Position

Hao Lin Ph.D. Professor

He received his Ph.D. in Biophysics in 2007 from Inner Mongolia University (Supervisor: Qian-Zhong Li). He achieved the New Scholar award and One Hundred Person Project of UESTC. He also obtained the Science and Technology Progress awards of Sichuan and Hebei. His published papers have over 6,500 cites. Now he is the member of Center for Informational Biology and the Key Laboratory for NeuroInformation of Ministry of Education in UESTC. He often serves as reviewer for over 100 international journals.

E-mail: hlin@uestc.edu.cn

 

Selected Papers


33. Hui Yang, Wuritu Yang, Fu-Ying Dao, Hao Lv, Hui Ding*, Wei Chen*, Hao Lin*. (2019) A comparison and assessment of computational method for identifying recombination hotspots in Saccharomyces cerevisiae. Briefings in Bioinformatics, DOI: 10.1093/bib/bbz123. (2018 IF: 9.101)

32. Zhao-Chun Xu, Peng-Mian Feng, Hui Yang, Wang-Ren Qiu, Wei Chen*, Hao Lin*. (2019) iRNAD: a computational tool for identifying D modification sites in RNA sequence. Bioinformatics, DOI: 10.1093/bioinformatics/btz358.. (2018 IF: 4.531)

31. Hao Lv, Zi-Mei Zhang, Shi-Hao Li, Jiu-Xin Tan, Wei Chen*, Hao Lin*. (2019) Evaluation of different computational methods on 5-methylcytosine sites identification. Briefings in Bioinformatics, DOI: 10.1093/bib/bbz048. (2018 IF: 9.101)

30. Wei Chen*, Pengmian Feng, Xiaoming Song, Hao Lv, Hao Lin*. (2019) iRNA-m7G: identifying N7-methylguanosine sites by fusing multiple features. Molecular Therapy - Nucleic Acids, 18: 269-274. (2018 IF: 5.919)

29. Wei Chen*, Pengmian Feng, Xiaoming Song, Hao Lv, Hao Lin*. (2019) iRNA-m2G: identifying N2-methylguanosine sites based on sequence derived information. Molecular Therapy - Nucleic Acids, 18: 253-258. (2018 IF: 5.919)

28. Wei Chen*, Hao Lv, Fulei Nie, Hao Lin*. (2019) i6mA-Pred:Identifying DNA N6-methyladenine sites in the rice genome. Bioinformatics, 35(16): 2796–2800. (2018 IF: 4.531)

27. Hao Lin*, Zhi-Yong Liang, Hua Tang, Wei Chen*. (2019) Identifying sigma70 promoters with novel pseudo nucleotide composition. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 16(4): 1316-1321. (2018 IF: 2.896) (ESI)

26. Hong-Yan Lai&, Zhao-Yue Zhang&, Zhen-Dong Su, Wei Su, Hui Ding, Wei Chen*, Hao Lin*. (2019) iProEP: a computational predictor for predicting promoter. Molecular Therapy - Nucleic Acids, 17: 337-346. (2018 IF: 5.919)

25. Fu-Ying Dao, Hao Lv, Fang Wang, Chao-Qin Feng, Hui Ding*, Wei Chen*, Hao Lin*. (2019) Identify origin of replication in Sccharomyces cerevisiae using two-step feature selection technique. Bioinformatics, 35(12):2075-2083. (2018 IF: 4.531) (ESI)

24. Chao-Qin Feng, Zhao-Yue Zhang, Xiao-Juan Zhu, Yan Lin, Wei Chen*, Hua Tang*, Hao Lin*. (2019) iTerm-PseKNC: a sequence-based tool for predicting bacterial transcriptional terminators. Bioinformatics, 35(9): 1469-1477. (2018 IF: 4.531) (ESI hot)

23. Li Liu*, Qian-Zhong Li*, Wen Jin, Hao Lv, Hao Lin*. (2019) Revealing gene function and transcription relationship by reconstructing gene-level chromatin interaction. Computational and Structural Biotechnology Journal, 17: 195-205. (2018 IF: 4.72)

22. Xiao-Juan Zhu, Chao-Qin Feng, Hong-Yan Lai, Wei Chen*, Hao Lin*. (2019) Predicting protein structural classes for low-similarity sequences by evaluating different features. Knowledge-Based Systems, 163: 787-793. (2018 IF: 5.101) (ESI)

21. Zhen-Dong Su, Yan Huang, Zhao-Yue Zhang, Ya-Wei Zhao, Dong Wang, Wei Chen*, Kuo-Chen Chou*, Hao Lin*. (2018) iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC. Bioinformatics, 34(24): 4196-4204. (2017 IF: 5.481) (ESI hot)

20. Hui Yang, Hao Lv, Hui Ding, Wei Chen*, Hao Lin*. (2018) iRNA-2OM: A sequence-based predictor for identifying 2’-O-methylation sites in Homo sapiens. Journal of Computational Biology, 25(11): 1266-1277. (2017 IF: 1.191) (ESI)

19. Hua Tang*, Ya-Wei Zhao, Ping Zou, Chun-Mei Zhang, Rong Chen, Po Huang, Hao Lin*. (2018) HBPred: a tool to identify growth hormone-binding proteins. International Journal of Biological Sciences, 14(8): 957-964. (2017 IF: 4.057) (ESI)

18. Hui Yang, Wang-Ren Qiu, Guoqing Liu, Feng-Biao Guo, Wei Chen*, Kuo-Chen Chou*, Hao Lin*. (2018) iRSpot-Pse6NC: Identifying recombination spots in Saccharomyces cerevisiae by incorporating hexamer composition into general PseKNC. International Journal of Biological Sciences, 14(8): 883-891. (2017 IF: 4.057) (ESI)

17. Wei Chen*.Hui Yang, Peng-Mian Feng, Hui Ding, Hao Lin*. (2017) iDNA4mC: identifying DNA N4-methylcytosine sites based on nucleotide chemical properties. Bioinformatics, 33(22): 3518-3523. (2016 IF: 7.307) (ESI hot)

16. Pengmian Feng, Hui Ding, Hui Yang, Wei Chen*, Hao Lin*, Kuo-Chen Chou*. (2017) iRNA-PseColl: Identifying the occurrence sites of different RNA modifications by incorporating collective effects of nucleotides into PseKNC. Molecular Therapy - Nucleic Acids, 7: 155–163. (2016 IF: 6.392) (ESI, Hot)

15. Zhi-Yong Liang, Hong-Yan Lai, Huan Yang, Chang-Jian Zhang, Hui Yang, Huan-Huan Wei, Xin-Xin Chen, Ya-Wei Zhao, Zhen-Dong Su, Wen-Chao Li, En-Ze Deng, Hua Tang, Wei Chen*, Hao Lin* (2017) Pro54DB: a database for experimentally verified sigma-54 promoters. Bioinformatics, 33(3): 467-469. (2016 IF: 7.307) (ESI)

14. Ting Zhang, Puwen Tan, Liqiang Wang, Nana Jin, Yana Li, Lin Zhang, Huan Yang, Zhenyu Hu, Lining Zhang, Chunyu Hu, Chunhua Li, Kun Qian, Changjian Zhang, Yan Huang, KongningLi*, Hao Lin*, Dong Wang*. (2017) RNALocate: a resource for RNA Subcellular Localizations. Nucleic Acids Research, 45(D1): D135-D138. (2016 IF: 10.162) (ESI)

13. Wei Chen*, Hua Tang, Jing Ye, Hao Lin*, Kuo-Chen Chou*. (2016) iRNA-PseU: Identifying RNA pseudouridine sites. Molecular Therapy - Nucleic Acids, 5: e332. (2015 IF: 5.048)(ESI)

12. Wen-Chao Li, En-Ze Deng, Hui Ding*, Wei Chen*, Hao Lin* (2015) iORI-PseKNC: a predictor for identifying origin of replication with pseudo k-tuple nucleotide composition. Chemometrics and Intelligent Laboratory Systems, 141: 100-106. (2013 IF: 2.381)

11. Hao Lin*, En-Ze Deng, Hui Ding, Wei Chen*, Kuo-Chen Chou*. (2014) iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition. Nucleic Acids Research, 42(21): 12961-12972. (2013 IF: 8.808) (ESI hot)

10. Wen-Chao Li, Zhe-Jin Zhong, Pan-Pan Zhu, En-Ze Deng, Hui Ding*, Wei Chen*,Hao Lin*. (2014) Sequence analysis of origins of replication in the Saccharomyces cerevisiae genomes. Frontiers in Microbiology, 5: 574. (2013 IF: 3.9)

9. Shou-Hui Guo, En-Ze Deng, Li-Qin Xu, Hui Ding, Hao Lin*, Wei Chen*, Kuo-Chen Chou*. (2014) iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition. Bioinformatics, 30(11): 1522-1529. (2012 IF: 5.323) (ESI hot)

8. Wei Chen*, Peng-Mian Feng, Hao Lin*, Kuo-Chen Chou*. (2013) iRSpot-PseDNC: Identify recombination spots with pseudo dinucleotide composition. Nucleic Acids Research, 41(6): e68. (2012 IF: 8.278) (ESI)

7. Hui Ding*, Shou-Hui Guo, En-Ze Deng, Lu-Feng Yuan, Feng-Biao Guo, Jian Huang, Nini Rao, Wei Chen*, Hao Lin*. (2013) Prediction of Golgi-resident protein types by using feature selection technique. Chemometrics and Intelligent Laboratory Systems, 124: 9-13. (2012 IF: 2.291)

6. Chen Ding, Lu-Feng Yuan, Shou-Hui Guo, Hao Lin*, Wei Chen*. (2012) Identification of mycobacterial membrane proteins and their types using over-represented tripeptide compositions. Journal of Proteomics, 77: 321-328. (2010 IF: 5.074)

5. Wei Chen*, Pengmian Feng, Hao Lin*. (2012) Prediction of replication origins by calculating DNA structural properties. FEBS Letters, 586(6): 934-938. (2012 IF: 3.582)

4. Hao Lin*, Hui Ding. (2011) Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition. Journal of Theoretical Biology, 269(1): 64-69. (2011 IF: 2.208)

3. Hao Lin*, Hui Ding, Feng-Biao Guo, Jian Huang. (2010) Prediction of subcellular location of mycobacterial protein using feature selection techniques. Molecular Diversity, 14(4): 667-671. (2010 IF: 3.721)

2. Hao Lin*. (2008) The modified Mahalanobis Discriminant for predicting outer membrane proteins by using chou's pseudo amino acid composition.Journal of Theoretical Biology, 252(2): 350-356. (2008 IF: 2.454) (ESI)

1. Hao Lin, Qian-Zhong Li*. (2007) Using pseudo amino acid composition to predict protein structural class: approached by incorporating 400 dipeptide components. Journal of Computational Chemistry, 28(9): 1463-1466. (2006 IF: 4.893)