Introduction
PseKNC-General (the general form of pseudo k-tuple nucleotide composition) is a cross-platform standalone and open-source package that can be used to represent a DNA or RNA sequence with a discrete model or vector yet still keeping considerable sequence-order information, particularly the global or long-range sequence-order information via the physicochemical properties of its constituent oligonucleotides.
Download
The PseKNC-General package can be run on Linux, Mac, and Windows systems. It not only provides a command line environment, but also a user-friendly graphical user interface (GUI). The cross-platform standalone and open-source package can be freely downloaded.
Mannual
A User Manual For PseKNCC-General
Related resources
Citations
[1] Wei Chen, Tian-Yu Lei, Dian-Chuan Jin, Hao Lin, Kuo-Chen Chou. (2014) PseKNC: a flexible web-server for generating pseudo K-tuple nucleotide composition. Analytical Biochemistry, 456: 53-60.
[2] Shou-Hui Guo, En-Ze Deng, Li-Qin Xu, Hui Ding, Hao Lin, Wei Chen, Kuo-Chen Chou. (2014) iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition. Bioinformatics, 30(11): 1522-1529.
[3] Wei Chen, Peng-Mian Feng, Hao Lin, Kuo-Chen Chou. (2013) iRSpot-PseDNC: Identify recombination spots with pseudo dinucleotide composition. Nucleic Acids Research, 41(6): e68.
[4] Hao Lin*, En-Ze Deng, Hui Ding, Wei Chen*, Kuo-Chen Chou*. (2014) iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition. Nucleic Acids Research, accepted
[5] Wei Chen, Xitong Zhang, Jordan Brooker, Hao Lin, Liqing Zhang, Kuo-Chen Chou. (2014) PseKNC-General: A cross-platform package for generating various modes of pseudo nucleotide compositions. Bioinformatics, accepted