Species ID | Strain Name | GenBank accession number | Genomic length | GC content of
genome (GC content of promoter) |
Purine content at TSS | 5' UTR average length |
60 | Sinorhizobium meliloti 1021 | NC_003047.1 (chr) | 3654135 | 62.7% (57.8%) | 63.8% | 52.99 |
NC_003037.1 (pSymA) | 1354226 | 60.4% (56.2%) | 65.1% | |||
NC_003078.1 (pSymB) | 1683333 | 62.4% (58.1%) | 65.2% | |||
15 | Bradyrhizobium japonicum USDA 110 | NC_004463.1 (chr) | 9105828 | 64.1% (59.6%) | 37.2% | 172.76 |
59 | Shigella flexneri 5a str. M90T | NZ_CP037923.1 (chr) | 4596714 | 50.9% (47.0%) | 47.9% | NA |
NZ_CP037924.1 (pWR100) | 232195 | 45.7% (42.5%) | 44.7% | |||
40 | Nostoc sp. PCC7120 | NC_003272.1 (chr) | 6413771 | 41.4% (38.7%) | 91.2% | NA |
NC_003276.1 (alpha) | 408101 | 40.5% (37.7%) | 88.7% | |||
NC_003240.1 (beta) | 186614 | 40.2% (37.6%) | 90.0% | |||
NC_003273.1 (delta) | 55414 | 41.6% (37.4%) | 91.1% | |||
NC_003267.1 (gamma) | 101965 | 41.0% (38.3%) | 86.8% | |||
NC_003241.1 (zeta) | 5584 | 44.2% (42.2%) | 100.0% | |||
NC_003270.1(epsilon) | 40340 | 40.9% (36.9%) | 96.3% | |||
17 | Burkholderia cenocepacia J2315 | AM747720.1 (chr1) | 3870082 | 66.9% (60.7%) | 60.5% | 120.35 |
AM747721.1 (chr2) | 3217062 | 67.3% (60.1%) | 68.8% | |||
AM747722.1 (chr3) | 875977 | 66.9% (66.5%) | 59.9% | |||
AM747723.1 (pBCJ2315) | 92661 | 62.8% (59.1%) | 81.9% | |||
28 | Escherichia coli str K-12 substr. MG1655 | NC_000913.3 (chr) | 4641652 | 50.8% (44.5%) | 68.2% | 125.86 |
46 | Pseudomonas putida KT2440 | NC_002947.3 (chr) | 6181863 | 61.5% (58.9%) | 53.3% | 138.38 |
30 | Haloferax volcanii DS2 | NC_013967.1 (chr) | 2847757 | 66.6% (58.7%) | 89.0% | 20.98 |
NC_013968.1 (pHV1) | 85092 | 55.5% (49.9%) | 86.5% | |||
NC_013964.1 (pHV3) | 437906 | 65.6% (57.2%) | 86.8% | |||
NC_013966.1 (pHV4) | 635786 | 61.7% (53.7%) | 85.6% | |||
26 | Corynebacterium glutamicum ATCC 13032 | BX927147.1 (chr) | 3282708 | 53.8% (46.5%) | 92.9% | 112.12 |
72 | Xanthomonas campestris pv. campestrie B100 | AM920689.1 (chr) | 5079002 | 65.0% (60.9%) | 74.0% | 27.90 |
62 | Staphylococcus aureus subsp. aureus MW2 | NC_003923.1 (chr) | 2820462 | 32.8% (26.2%) | 86.3% | NA |
68 | Thermococcus kodakarensis KOD1 | NC_006624.1 (chr) | 2088737 | 52.0% (43.9%) | 87.0% | 121.87 |
42 | Paenibacillus riograndensis SBR5 | NZ_LN831776.1 (chr) | 7919576 | 51.0% (43.4%) | 74.5% | 392.62 |
31 | Helicobacter pylori strain 26695 | NC_000915.1 (chr) | 1667867 | 38.9% (33.7%) | 70.7% | 70.15 |
63 | Staphylococcus epidermidis ATCC 12228 | NC_004461.1 (chr) | 2499279 | 32.1% (25.6%) | 89.5% | NA |
NC_005008.1 (pSE-12228-01) | 4439 | 30.1% (27.7%) | 94.7% | |||
NC_005007.1 (pSE-12228-02) | 4679 | 31.8% (26.3%) | 90.9% | |||
NC_005006.1 (pSE-12228-03) | 8007 | 35.6% (33.2%) | 100.0% | |||
NC_005005.1 (pSE-12228-04) | 17261 | 28.0% (26.0%) | 85.7% | |||
NC_005004.1 (pSE-12228-05) | 24365 | 29.3% (26.3%) | 89.6% | |||
NC_005003.1 (pSE-12228-06) | 6585 | 31.5% (22.9%) | 100.0% | |||
20 | Campylobacter jejuni RM1221 | NC_003912.7 (chr) | 1777831 | 30.3% (24.5%) | 74.0% | 68.10 |
22 | Campylobacter jejuni subsp. jejuni 81-176 | NC_008787.1 (chr) | 1616554 | 30.6% (24.5%) | 74.5% | 69.41 |
NC_008770.1 (pVir) | 37473 | 25.9% (23.0%) | 84.3% | |||
NC_008790.1 (pTet) | 45025 | 29.1% (27.1%) | 72.4% | |||
21 | Campylobacter jejuni subsp. jejuni 81116 | NC_009839.1 (chr) | 1628115 | 30.5% (24.3%) | 72.7% | 65.16 |
23 | Campylobacter jejuni subsp. jejuni NCTC 11168 | NC_002163.1 (chr) | 1641481 | 30.5% (24.5%) | 72.6% | 62.61 |
25 | Corynebacterium diphtheriae NCTC 13129 | NC_002935.2 (chr) | 2488635 | 53.5% (46.6%) | 90.7% | 111.05 |
1 | Acinetobacter baumannii ATCC 17978 | CP000521.1 (chr) | 3976747 | 39.0% (33.2%) | 66.1% | NA |
CP000522.1 (pAB1) | 13408 | 36.2% (33.5%) | 87.5% | |||
CP000523.1 (pAB2) | 11302 | 35.2% (31.1%) | 80.0% | |||
66 | Synechococcus elongatus PCC 7942 | CP000100.1 (chr) | 2695903 | 55.5% (51.4%) | 75.7% | 50.04 |
67 | Synechocystis sp. PCC6803 | NC_000911.1 (chr) | 3573470 | 47.7% (43.9%) | 88.5% | NA |
65 | Streptococcus pyogenes strain S119 | LR031521.1 (chr) | 1877450 | 38.6% (29.0%) | 94.9% | NA |
12 | Bacillus subtilis subsp. subtilis str. 168 | NC_000964.3 (chr) | 4215606 | 43.5% (32.9%) | 81.4% | 141.69 |
32 | Klebsiella aerogenes KCTC 2190 | NC_015663.1 (chr) | 5280350 | 54.9% (45.4%) | 78.9% | NA |
5 | Agrobacterium tumefaciens strain C58 | NC_003062.2 (circular chr) | 2841580 | 59.4% (49.3%) | 53.5% | 90.01 |
NC_003063.2 (linear chr) | 2075577 | 59.3% (48.8%) | 51.1% | |||
NC_003064.2 (At) | 542868 | 57.3% (47.4%) | 45.4% | |||
NC_003065.3 (Ti) | 214233 | 56.7% (42.2%) | 62.6% | |||
41 | Onion yellows phytoplasma OY-M | AP006628.2 (chr) | 853092 | 27.8% (28.3%) | 45.4% | 360.03 |