Species ID Strain Name GenBank accession number Genomic length GC content of genome
(GC content of promoter)
Purine content at TSS 5' UTR average length
60 Sinorhizobium meliloti 1021 NC_003047.1 (chr) 3654135 62.7% (57.8%) 63.8% 52.99
NC_003037.1 (pSymA) 1354226 60.4% (56.2%) 65.1%
NC_003078.1 (pSymB) 1683333 62.4% (58.1%) 65.2%
15 Bradyrhizobium japonicum USDA 110 NC_004463.1 (chr) 9105828 64.1% (59.6%) 37.2% 172.76
59 Shigella flexneri 5a str. M90T NZ_CP037923.1 (chr) 4596714 50.9% (47.0%) 47.9% NA
NZ_CP037924.1 (pWR100) 232195 45.7% (42.5%) 44.7%
40 Nostoc sp. PCC7120 NC_003272.1 (chr) 6413771 41.4% (38.7%) 91.2% NA
NC_003276.1 (alpha) 408101 40.5% (37.7%) 88.7%
NC_003240.1 (beta) 186614 40.2% (37.6%) 90.0%
NC_003273.1 (delta) 55414 41.6% (37.4%) 91.1%
NC_003267.1 (gamma) 101965 41.0% (38.3%) 86.8%
NC_003241.1 (zeta) 5584 44.2% (42.2%) 100.0%
NC_003270.1(epsilon) 40340 40.9% (36.9%) 96.3%
17 Burkholderia cenocepacia J2315 AM747720.1 (chr1) 3870082 66.9% (60.7%) 60.5% 120.35
AM747721.1 (chr2) 3217062 67.3% (60.1%) 68.8%
AM747722.1 (chr3) 875977 66.9% (66.5%) 59.9%
AM747723.1 (pBCJ2315) 92661 62.8% (59.1%) 81.9%
28 Escherichia coli str K-12 substr. MG1655 NC_000913.3 (chr) 4641652 50.8% (44.5%) 68.2% 125.86
46 Pseudomonas putida KT2440 NC_002947.3 (chr) 6181863 61.5% (58.9%) 53.3% 138.38
30 Haloferax volcanii DS2 NC_013967.1 (chr) 2847757 66.6% (58.7%) 89.0% 20.98
NC_013968.1 (pHV1) 85092 55.5% (49.9%) 86.5%
NC_013964.1 (pHV3) 437906 65.6% (57.2%) 86.8%
NC_013966.1 (pHV4) 635786 61.7% (53.7%) 85.6%
26 Corynebacterium glutamicum ATCC 13032 BX927147.1 (chr) 3282708 53.8% (46.5%) 92.9% 112.12
72 Xanthomonas campestris pv. campestrie B100 AM920689.1 (chr) 5079002 65.0% (60.9%) 74.0% 27.90
62 Staphylococcus aureus subsp. aureus MW2 NC_003923.1 (chr) 2820462 32.8% (26.2%) 86.3% NA
68 Thermococcus kodakarensis KOD1 NC_006624.1 (chr) 2088737 52.0% (43.9%) 87.0% 121.87
42 Paenibacillus riograndensis SBR5 NZ_LN831776.1 (chr) 7919576 51.0% (43.4%) 74.5% 392.62
31 Helicobacter pylori strain 26695 NC_000915.1 (chr) 1667867 38.9% (33.7%) 70.7% 70.15
63 Staphylococcus epidermidis ATCC 12228 NC_004461.1 (chr) 2499279 32.1% (25.6%) 89.5% NA
NC_005008.1 (pSE-12228-01) 4439 30.1% (27.7%) 94.7%
NC_005007.1 (pSE-12228-02) 4679 31.8% (26.3%) 90.9%
NC_005006.1 (pSE-12228-03) 8007 35.6% (33.2%) 100.0%
NC_005005.1 (pSE-12228-04) 17261 28.0% (26.0%) 85.7%
NC_005004.1 (pSE-12228-05) 24365 29.3% (26.3%) 89.6%
NC_005003.1 (pSE-12228-06) 6585 31.5% (22.9%) 100.0%
20 Campylobacter jejuni RM1221 NC_003912.7 (chr) 1777831 30.3% (24.5%) 74.0% 68.10
22 Campylobacter jejuni subsp. jejuni 81-176 NC_008787.1 (chr) 1616554 30.6% (24.5%) 74.5% 69.41
NC_008770.1 (pVir) 37473 25.9% (23.0%) 84.3%
NC_008790.1 (pTet) 45025 29.1% (27.1%) 72.4%
21 Campylobacter jejuni subsp. jejuni 81116 NC_009839.1 (chr) 1628115 30.5% (24.3%) 72.7% 65.16
23 Campylobacter jejuni subsp. jejuni NCTC 11168 NC_002163.1 (chr) 1641481 30.5% (24.5%) 72.6% 62.61
25 Corynebacterium diphtheriae NCTC 13129 NC_002935.2 (chr) 2488635 53.5% (46.6%) 90.7% 111.05
1 Acinetobacter baumannii ATCC 17978 CP000521.1 (chr) 3976747 39.0% (33.2%) 66.1% NA
CP000522.1 (pAB1) 13408 36.2% (33.5%) 87.5%
CP000523.1 (pAB2) 11302 35.2% (31.1%) 80.0%
66 Synechococcus elongatus PCC 7942 CP000100.1 (chr) 2695903 55.5% (51.4%) 75.7% 50.04
67 Synechocystis sp. PCC6803 NC_000911.1 (chr) 3573470 47.7% (43.9%) 88.5% NA
65 Streptococcus pyogenes strain S119 LR031521.1 (chr) 1877450 38.6% (29.0%) 94.9% NA
12 Bacillus subtilis subsp. subtilis str. 168 NC_000964.3 (chr) 4215606 43.5% (32.9%) 81.4% 141.69
32 Klebsiella aerogenes KCTC 2190 NC_015663.1 (chr) 5280350 54.9% (45.4%) 78.9% NA
5 Agrobacterium tumefaciens strain C58 NC_003062.2 (circular chr) 2841580 59.4% (49.3%) 53.5% 90.01
NC_003063.2 (linear chr) 2075577 59.3% (48.8%) 51.1%
NC_003064.2 (At) 542868 57.3% (47.4%) 45.4%
NC_003065.3 (Ti) 214233 56.7% (42.2%) 62.6%
41 Onion yellows phytoplasma OY-M AP006628.2 (chr) 853092 27.8% (28.3%) 45.4% 360.03